Changelog

Version 1.1.10

  • Added parameter output_series_as_dataset for control over output of series.

  • Added parameter only_align for raw alignment only.

Version 1.1.9

  • Fix for timestamp parsing of Digital Micrograph files (thanks to Hüseyin Celik)

  • Fix for deprecated numpy 2.0 functions (thanks to Hüseyin Celik)

Version 1.1.8

  • Dropped Python 2.X support

  • Fix deprecated functions

  • Added CI/CD support for GitLab

Version 1.1.7

  • Output file attribute ‘reconstructionCutOff2(nm2)’ was set erroneously to isotropic cut off. Now squared anisotropic cut off is output as stated in the documentation.

Version 1.1.6

  • Parameters ‘object_names’ and ‘empty_names’ now also allow file name lists instead of the printf-based syntax

Version 1.1.5 (unreleased)

  • New parameter ‘align_cut_off’ allows specification of a dedicated raw alignment cut_off

Version 1.1.4

  • Fixed bug, which caused the ‘path’ parameter to be ignored for some input files

  • Fixed bug in configurable file importer, which occured when the deprecated syntas was used

  • New parameter ‘cut_off2’ introduced, which allows nonisotropic reconstruction masks

Version 1.1.3

  • Fixed a bug, which might have caused slight phase gradients over the image, if a ROI was used

  • Display hint for use of PyFFTW

  • Acceleration voltage for defocus propagation now taken from parameter file instead of image files, when present

Version 1.1.2

  • Single hologram reconstructions do not require printf-format codes in input file paramters

  • Include parameters in output file

  • Include holoaverage version in output file

  • Display global holograms amplitudes instead of intensities during reconstruction

  • Made syntax of configurable file importer more URL-like.

Version 1.1.1

  • Deprecation warnings are displayed by default

  • Parameter ‘output’ was renamed to ‘output_name’

  • New parameter ‘output_prefix’ allows control over dataset names in output

  • Added program overview to documentation

  • Configurable image file importer

  • Raw input image files

  • New parameter ‘enable_raw_align’ to allow control over raw alignment

  • Commandline option to print version number

  • Improved handling of DM3 tag names encoding